PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G164600.3
Common NameB456_007G164600, LOC105803395
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 380aa    MW: 40712.8 Da    PI: 4.382
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G164600.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.5e-06444539
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        +C+ +++++   +C+++  +lC +C  + H+       H++
  Gorai.007G164600.3  4 ICDFCGDQPSLVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                        7*****************************65677777765 PP

2zf-B_box20.69e-074689441
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                          C++++++++   C + ++ lC++C   +H        H++++
  Gorai.007G164600.3 46 LLCERCNSQPAFVRCAEEKVSLCQNCDWMGHDAstsnstHKRQT 89
                        57*****************************4477788888766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.271147IPR000315B-box-type zinc finger
CDDcd000214.64E-8447No hitNo description
SMARTSM003362.1E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8164390IPR000315B-box-type zinc finger
CDDcd000211.79E-44790No hitNo description
SMARTSM003361.14890IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGYICDFCGD QPSLVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC  60
AEEKVSLCQN CDWMGHDAST SNSTHKRQTI NSYSGCPSSG ELSSIWSFFS QSDSAGESAC  120
EQELGLMSIS ENIESTSWDP TVNTISHNSA GVAEVNGDCN VDKGSGWTRT SIPEHRPAPQ  180
LLDQPAGSTD TSLPKFCPQT KYPGLSEDDL YDDFNIDEVD LNLENYEELF GVTLNHSEEL  240
LENGGIDSLF GTKDMSAADS TCQGAVAAEG SSIGLVNAIQ PACSNAASAD SVMSNKTDSI  300
LYFTTKHAHS SLSFSGLTGE SSAGDYQDCG ASSMLLMGEP PWCPPCTESS IPSATRSDAV  360
MRYKEKKKTR KSLLDCGAR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491006.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X2
SwissprotQ9LUA91e-121COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A0D2QTY90.0A0A0D2QTY9_G
STRINGGLYMA13G11592.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-115B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]